博士（農学）, 東京大学大学院

環境・農学, 遺伝育種科学 , 遺伝育種科学

ライフサイエンス, ゲノム生物学 , ゲノム科学

2001年 - 2009年
財団法人岩手生物工学研究センター主任研究員

1998年 - 2001年
財団法人岩手生物工学研究センター研究員

1996年 - 1998年
東京大学分子細胞生物学研究所博士研究員

1993年 - 1996年, 東京大学大学院, 農学生命科学, 生産•環境生物学

1991年 - 1993年, 東京大学大学院, 農学生命科学, 生産•環境生物学

1987年 - 1991年, 東京大学, 農学部, 農業生物学科

2010年
優秀発表賞（日本育種学会）

Molecular mapping of genomic regions and identification of possible candidate genes associated with gynoecious sex expression in bitter gourd
Vinay N. D., Hideo Matsumura, Anilabha Das Munshi, Ranjith Kumar Ellur, Viswanathan Chinnusamy, Ankita Singh, Mir Asif Iquebal, Sarika Jaiswal, Gograj Singh Jat, Ipsita Panigrahi, Ambika Baladev Gaikwad, A. R. Rao, Shyam Sundar Dey, Tusar Kanti Behera
Frontiers in Plant Science, 14, 1071648, 2023年, 査読有り, 招待無し

Quantitative trait loci for sex ratio in monoecious bitter gourd (Momordica charantia)
Haru Karube, Shota Suzuki, Norimichi Miyagi, Naoki Taniai, Mayuko Miyake, Kazuhiko Tarora, Naoya Urasaki, Hideo Matsumura
Scientia Horticulturae, 321, 112330, 2023年, 査読有り, 招待無し
最終著者, 責任著者

Development of PCR-based marker for resistance to Fusarium wilt race 2 in lettuce (Lactuca sativa L.)
Kousuke Seki, Kenji Komatsu, Masahiro Hiraga, Keisuke Tanaka, Yuichi Uno & Hideo Matsumura
Euphytica, 217, 126, 2021年
最終著者, 責任著者

Genomic characterization of a rare Carica papaya X chromosome mutant reveals a candidate monodehydroascorbate reductase 4 gene involved in all-hermaphrodite phenomenon
Jen-Ren Chen , Hiroki Ueno, Hideo Matsumura, Naoya Urasaki, Chen-Yu Lee, Fure-Chyi Chen, Shih-Wen Chin, Chun-Chi Liu , Chan-Tai Chiu, Kazuhiko Tarora, Jing-Yi Li, Chieh Ying Lee, Hsin-Mei Ku
Mol Genet Genomics, 296(6), 1323-1335, 2021年

Long-read bitter gourd (Momordica charantia) genome and the genomic architecture of nonclassic domestication
Matsumura H, Hsiao MC, Lin YP, Toyoda A, Taniai N, Tarora K, Urasaki N, Anand SS, Dhillon P.S. N, Schafleitner R, Lee CR
Proc. Natl. Acad. Sci. USA, 117(25), 14543-14551, 2020年

Identification of two significant QTLs for highly resistance to Fusarium wilt race 1 in lettuce (Lactuca sativa L.)
Seki K., Komatsu K., Hiraga M., Tanaka K., Uno Y., Matsumura H.
Euphytica, 216, 174, 2020年
最終著者

A CIN-like TCP transcription factor (LsTCP4) having retrotransposon insertion associates with a shift from Salinas type to Empire type in crisphead lettuce (Lactuca sativa L.)
Kousuke Seki, Kenji Komatsu, Keisuke Tanaka, Masahiro Hiraga, Hiromi Kajiya-Kanegae, Hideo Matsumura, Yuichi Uno
Horticulture Research, 7, 15, 2020年

Identification of dominant genetic markers relevant to male sex determination in mulberry (Morus alba L.)
Atsumi, Ryo; Nishihara, Rio; Tarora, Kazuhiko; Urasaki, Naoya; Matsumura, Hideo;
Euphytica, 215(11), 2019年10月

HT-SuperSAGE of the gut tissue of a Vip3Aa-resistant Heliothis virescens (Lepidoptera: Noctuidae) strain provides insights into the basis of resistance
Ayra-Pardo, Camilo; Ochagavia, Maria E.; Raymond, Ben; Gulzar, Asim; Rodriguez-Cabrera, Lianet; Rodriguez de la Noval, Claudia; Moran Bertot, Ivis; Terauchi, Ryohei; Yoshida, Kentaro; Matsumura, Hideo; Tellez Rodriguez, Pilar; Hernandez Hernandez, Daily; Borras-Hidalgo, Orlando; Wright, Denis J.;
INSECT SCIENCE, 26(3), 479-498, 2019年06月

Dissecting the all-hermaphrodite phenomenon of a rare X chromosome mutant in papaya (Carica papaya L.)
Chen, Jen-Ren; Urasaki, Naoya; Matsumura, Hideo; Chen, I-Cheng; Lee, Mei-Jiuan; Chang, Hui-Ju; Chung, Wen-Chuan; Ku, Hsin-Mei;
Molecular Breeding, 39(1), 2019年01月

Identification of candidate flowering and sex genes in white Guinea yam (D. rotundata Poir.) by SuperSAGE transcriptome profiling.
Girma G, Natsume S, Carluccio AV, Takagi H, Matsumura H, Uemura A, Muranaka S, Takagi H, Stavolone L, Gedil M, Spillane C, Terauchi R, Tamiru M.
PLOS ONE, 14(9), e0216912, 2019年

Draft genome sequence of bitter gourd (Momordica charantia), a vegetable and medicinal plant in tropical and subtropical regions
Naoya Urasaki, Hiroki Takagi, Satoshi Natsume, Aiko Uemura, Naoki Taniai, Norimichi Miyagi, Mai Fukushima, Shouta Suzuki, Kazuhiko Tarora, Moritoshi Tamaki, Moriaki, Sakamoto, Ryohei Terauchi, Hideo Matsumura
DNA Research, 24, 51-58, 2017年

OsHKT1;5 mediates Na+ exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.
Kobayashi NI, Yamaji N, Yamamoto H, Okubo K, Ueno H, Costa A, Tanoi K, Matsumura H, Fujii-Kashino M, Horiuchi T, Nayef MA, Shabala S, An G, Ma JF, Horie T.
Plant J., 2017年

Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination
Tamiru, M., Natsume, S., Takagi, Hiroki, White, B., Yaegashi, H., Shimizu, M., Yoshida, K., Uemura, A., Oikawa, K., Abe, A., Urasaki, N., Matsumura, H., Babil, P., Yamanaka, S., Matsumoto, R., Muranaka, S., Girma, G., Lopez-Montes, A., Gedil, M., Bhattacharjee, R., Abberton, M., Kumar, L., Rabbi, I., Tsujimura, M., Terachi, T., Haerty, W., Corpas, M., Kamoun, S., Kahl, G., Takagi, Hiroko, Asiedu, R., Terauchi, R.
BMC Biology, 15, 86, 2017年

Development of plants resistant to Papaya leaf distortion mosaic virus by intergeneric hybridization between Carica papaya and Vasconcellea cundinamarcensis.
Tarora K, Shudo A,Kawano S,Yasuda K,Ueno H, Matsumura H, Urasaki N
BREEDING SCIENCE, 66, 734-741, 2016年

'Candidatus Liberibacter asiaticus', Causal Agent of Citrus Huanglongbing, Is Reduced by Treatment with Brassinosteroids.
Eduardo Canales, Yamilet Coll, Ingrid Hernández, Roxana Portieles, Mayra Rodríguez García, Yunior López, Miguel Aranguren, Eugenio Alonso, Roger Delgado4 Maritza Luis, Lochy Batista, Camilo Paredes, Meilyn Rodríguez, Merardo Pujol, María Elena Ochagavia, Viviana Falcón, Ryohei Terauchi, Hideo Matsumura, Camilo Ayra-Pardo, Raixa Llauger, María del Carmen Pérez, Mirian Núñez, Melissa S. Borrusch, Jonathan D. Walton, Yussuan Silva, Eulogio Pimentel, Carlos Borroto, Orlando Borrás-Hidalgo
PLOS ONE, 11, e0146223, 2016年

Magnaporthe oryzae Glycine-Rich Secretion Protein, Rbf1 Critically Participates in Pathogenicity through the Focal Formation of the Biotrophic Interfacial Complex.
Nishimura T, Mochizuki S, Ishii-Minami N, Fujisawa Y, Kawahara Y, Yoshida Y, Okada K, Ando S, Matsumura H, Terauchi R, Minami E, Nishizawa Y
PLOS PATHOGENS, 12, e1005921, 2016年

MutMap accelerates breeding of a salt-tolerant rice cultivar
Hiroki Takagi, Muluneh Tamiru, Akira Abe, Kentaro Yoshida, Aiko Uemura, Hiroki Yaegashi, Tsutomu Obara, Kaori Oikawa, Hiroe Utsushi, Eiko Kanzaki, Chikako Mitsuoka, Satoshi Natsume, Shunichi Kosugi, Hiroyuki Kanzaki, Hideo Matsumura, Naoya Urasaki, Sophien Kamoun, Ryohei Terauchi
NATURE BIOTECHNOLOGY, in press, doi:10.1038/nbt.3188, 2015年

Genome sequence comparison reveals a candidate gene involved in male–hermaphrodite differentiation in papaya (Carica papaya) trees
Hiroki Ueno, Naoya Urasaki, Satoshi Natsume, Kentaro Yoshida, Kazuhiko Tarora, Ayano Shudo, Ryohei Terauchi, Hideo Matsumura
Mol. Genet. Genom., 290, 661-670, 2015年
最終著者, 責任著者

A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in rice (Oryza sativa L.)
Muluneh Tamiru, Jerwin R. Undan, Hiroki Takagi, Akira Abe, Kakoto Yoshida, Jesusa Q. Undan, Satoshi Natsume, Aiko Uemura, Hiromasa Saitoh, Hideo Matsumura, Naoya Urasaki, Takao Yokota, Ryohei Terauchi
Plant Molecular Biology, in press, 2015年

Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water.
Takahashi, H., Greenway, H., Matsumura, H., Tsutsumi N. and Nakazono, M
Ann. Bot, 113(5), 851-859, 2014年

Functional characterization of a new grapevine MYB transcription factor and regulation of proanthocyanidin biosynthesis in grapes.
Kazuya Koyama, Mineyo Numata, Ikuko Nakajima, Nami Goto-Yamamoto, Hideo Matsumura and Nobukazu Tanaka
Journal of Experimental Botany, 65, 4433-4449, 2014年

Mapping of the gynoecy in bitter gourd (Momordica charantia) using RAD-seq analysis
Matsumura H, Miyagi N, Taniai N, Fukushima M, Tarora K, Shudo A, Urasak N
PLOS ONE, 9(1), e87138, 2014年

MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii.
Takagi H., Uemura A., Yaegashi H., Tamiru M., Abe A., Mitsuoka C., Utsushi H., Natsume S., Kanzaki H., Matsumura H., Saitoh H., Yoshida K., Cano L.M., Kamoun S., Terauchi R
New Phytologist, 200(1), 276-283, 2013年

MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice.
Fekih, R., Takagi, H., Tamiru, M., Abe, A., Natsume, S., Yaegashi, H., Sharma, S., Sharma, S., Kanzaki, H., Matsumura, H., Saitoh, H., Mitsuoka, C., Utsushi, H., Uemura, A., Kanzaki, E., Kosugi, S., Yoshida, K., Cano, L., Kamoun, S., Terauchi, R
PLOS ONE, 8(7), e68529, 2013年

Deep sequencing uncovers commonality in small RNA profiles between transgene-induced and naturally occurring RNA silencing of chalcone synthase-A.
Kasai, M., Matsumura, H., Yoshida, K., Terauchi, R., Taneda, A., Kanazawa, A
BMC GENOMICS, 14, 63, 2013年

Distribution of CRa in clubroot resistance (CR) cultivars of Chinese cabbage
Aruga, D, Ueno H, Matsumura H, Matsumoto E, Hyashida N
Plant Biotechnol, 30, 393-397, 2013年

Expression of a microbial serine proteinase inhibitor gene enhances the tobacco defense against oomycete pathogens
Silva Y, Portieles R, Pujol M, Terauchi R, Matsumura H, Serrano M, Borras-Hidalgo O
Physiol Mol Plant Path, 84, 99-106, 2013年

Molecular characterization of the CRa gene conferring clubroot resistance in Brassica rapa.
Ueno H, Matsumoto E, Aruga D, Kitagawa S, Matsumura H, Hayashida N
Plant Mol Biol, 80(6), 621-629, 2012年12月

Large-scale gene disruption in Magnaporthe oryzae identifies MC69, a secreted protein required for infection by monocot and dicot fungal pathogens.
Saitoh H, Fujisawa S, Mitsuoka C, Ito A, Hirabuchi A, Ikeda K, Irieda H, Yoshino K, Yoshida K, Matsumura H, Tosa Y, Win J, Kamoun S, Takano Y, Terauchi R
PLoS Pathog, 8(5), e1002711, 2012年

Digital Transcriptome Analysis of Putative Sex-Determination Genes in Papaya (Carica papaya)
Naoya Urasaki, Kazuhiko Tarora, Ayano Shud1, Hiroki Ueno, Moritoshi Tamaki, Norimichi Miyag, Shinichi Adaniya, Hideo Matsumura
PLOS ONE, 7(7), e40904, 2012年

The gene expression landscape of thermogenic skunk cabbage suggests critical roles for mitochondrial and vacuolar metabolic pathways in the regulation of thermogenesis.
Ito-Inaba Y, Hida Y, Matsumura H, Masuko H, Yazu F, Terauchi R, Watanabe M, Inaba
Plant Cell Environ., 35, 554-566, 2012年

Whole genome sequencing and future breeding of rice.
Terauchi, R., Abe, A., Takagi, H., Yoshida, K., Kosugi, S., Natsume, S., Yaegashi, H, Kanzaki, H., Matsumura, H., Mitsuoka, C., Utsushi, H., Tamiru, M.
J. Plant Biochem. Biotechnol, 21, 10-14, 2012年

Genome sequencing reveals agronomically important loci in rice using MutMap.
Abe A, Kosugi S, Yoshida K, Natsume S, Takagi H, Kanzaki H, Matsumura H, Yoshida K, Mitsuoka C, Tamiru M, Innan H, Cano L, Kamoun S, Terauchi R.
Nat. Biotechnol., 30, 174-178, 2012年

Analysis of RAPD and AFLP markers linked to resistance to Fusarium oxysporum f. sp lactucae race 2 in lettuce (Lactuca sativa L.)
Aruga, D; Tsuchiya, N; Matsumura, H; Matsumoto, E; Hayashida, N
Euphytica, 187(1), 1-9, 2012年

A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes.
Okuyama Y, Kanzaki H, Abe A, Yoshida K, Tamiru M, Saitoh H, Fujibe T, Matsumura H, Shenton M, Galam DC, Undan J, Ito A, Sone T, Terauchi R.
Plant J., 66(3), 467-479, 2011年

Cell division and cell elongation in the coleoptile of rice alcohol dehydrogenase 1-deficient mutant are reduced under complete submergence.
Takahashi H, Saika H, Matsumura H, Nagamura Y, Tsutsumi N, Nishizawa NK, Nakazono M.
Ann. Bot., 108, 253-261, 2011年

Papaya heat stress transcription factor, CphsfB1, a constituent of a gene cluster related to seed germination
K. Tarora, M. Tamaki, A. Shudo, N. Urasaki, H. Matsumura, S. Adaniya
J. Plant Biotech., 102, 69-77, 2010年

Metabolome analysis of response to oxidative stress in rice suspension cells overexpressing cell death suppressor Bax inhibitor-1.
Ishikawa T, Takahara K, Hirabayashi T, Matsumura H, Fujisawa S, Terauchi R, Uchimiya H, Kawai-Yamada M.
Plant Cell Physiol., 51, 9-20, 2010年

High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing.
Matsumura H, Yoshida K, Luo S, Kimura E, Fujibe T, Albertyn Z, Barrero RA, Krüger DH, Kahl G, Schroth GP, Terauchi R
PLOS ONE, 5(8), e12010, 2010年

Unraveling the roles of sphingolipids in plant innate immunity.
Takahashi, Y., Berbeich, T., Kanzaki, H., Matsumura, H., Saitoh, H., Kusano,T., Terauchi, R.
Plant Signaling Behavior, 4, 536-538, 2009年

SuperSAGE: The drought stress-responsive transcriptome of chickpea roots.
Molina, C. M. M., Rotter, B., Horres, R., Udupa, S., Besser, B., Bellarmino, L., Baum, M., Matsumura, H., Terauchi, R., Kahl, G., Winter, P
BMC GENOMICS, 9, 553-580, 2009年

Serine palmitoyltransferase, the first step enzyme in sphingolipid biosynthesis, is involved in non-host resistance.
Takahashi, Y., Berberich, T., Kanzaki, H., Matsumura, H., Saitoh, H., Kusano, T., Terauchi, R.
Mol. Plant-Microbe Interact, 22, 31-38, 2009年

Functional characterization and modulation of the DNA cleavage efficiency of Type III restriction enconuclease EcoP15I in its interaction with two sites in the DNA target.
Moencke-Buchner, E. , Rothenberg, M., Reich, S., Wagenfuehr, K., Matsumura, H., Terauchi, R., Reuter, M., Krueger, D.H.
J. Mol. Biol., 387, 1309-1319, 2009年

Unravelling the interaction of HCMV with dendritic cells using SuperSAGE.
Raftery, M.J., Moncke-Buchner, E., Matsumura, H., Giese, T., Winkelmann, B., Reuter, M., Terauchi, R., Schonrich, G., Krueger, D. H.
J. Gen. Virol, 90, 2221-2233, 2009年

Rice blast association genetics reveals three novel avirulence genes, AVR-Pia, AVR-Pii, AVR-Pik/km/kp, whose products are recognized inside rice cells.
Yoshida, K., Saitoh, H., Fujisawa, S., Kanzaki, H., Matsumura,H., Yoshida, K., Tosa, Y., Chuma, I., Takano, Y., Win, J., Kamoun, S., Terauchi, R.
Plant Cell, 21, 1573-1591, 2009年

Coordination of plastid protein import and nuclear gene expression by plastid-to-nucleous retrograde signaling..
Kakizaki,T., Matsumura, H., Nakayama, K., Che, F.-S., Terauchi, R., Inaba, T.
Plant Physiol, 151, 1339-1353, 2009年

High-throughput in planta expression screening identifies an ADP-ribosylation factor (ARF1) involved in non-host resistance and R gene-mediated resistance.
Coemans, B., Takahashi, Y., Berberich, T., Ito, A., Kanzaki, H., Matsumura, H., Saitoh, H., Tsuda, S., Kamoun, S., Sági, L., Swennen, R., Terauchi, R
Mol. Plant Pathol, 9, 25-36, 2008年

SuperSAGE revealed different classes of early resistance response genes in Capsicum chinense plants harboring L3-resistance gene infected with Pepper mild mottle virus.
Hamada, H., Matsumura, H., Tomita, R., Terauchi, R.,Suzuki, K., Kobayashi,K.
J. General Plant Pathol., 74, 313-321, 2008年

The cell death factor, a cell wall elicitor of rice blast fungus (Magnaporthe grisea) causes metabolic alterations including GABA shunt in rice cultured cells.
Takahashi, H., Yamada-Kawai M., Matsumura, H., Uchimiya, H.
Plant Signaling Behavior, 3, 945-953, 2008年

Functionalgenomics in a non-model crop: transcriptomics or proteomics?
Carpentier, S.C., Coemans, B., Podevin, N., Laukens, K., Witters, E., Matsumura, H., Terauchi, R. Swennen, R. Panis, B
Physiol. Plant., 133, 117-130, 2008年

Spermine signaling plays a significant role in the defense response of Arabidopsis thaliana to cucumber mosaic virus.
Mitsuya, Y., Takahashi, Y., Berberich, T., Miyazaki, A., Matsumura, H., Takahashi, H., Terauchi, R., Kusano, T.
J. Plant Physiol, 166, 626-643, 2008年

Large-scale DNA polymorphism study of Oryza sativa and O. rufipogon reveals the origin and divergence of Asian rice.
Rakshit, S., Rakshit, A., Matsumura, H., Takahashi, Y., Hasegawa, Y., Ito, A., Ishii, T., Miyashita, N. T., Terauchi, R.
Theor. Appl. Genet., 114, 731-743, 2007年

High-throughput screen of cell death-inducing factors identifies a novel MAPKK that transduces INF1-mediated cell death signaling
Takahashi, Y. K. H. Bin Nasir, A. Ito, H. Kanzaki, H Matsumura, H. Saitoh, S. Fujisawa, S. Kamoun, R.Terauchi
Plant J., 49, 1030-1040, 2007年

A novel MAPKK involved in cell death and defense signaling.
Takahashi, Y., Bin Nasir, K. H., Ito, A., Kanzaki, H., Matsumura, H., Saitoh, H., Fujisawa, S., Kamoun, S., Terauchi, R
Plant Signaling and Behavior, 2, 396-398, 2007年

Regulatory mechanisms of ROI generation are affected by rice spl mutations.
Kojo, K. T.i Yaeno, K. Kusumi, H. Matsumura, S. Fujisawa, R. Terauchi, K. Iba
Plant Cell Physiol, 47, 1035-1044, 2006年

SuperSAGE array: the direct use of 26-base-pair transcript tags in oligonucleotide arrays.
Matsumura H., K.H.B, A, Nasir, K. Yoshida, A. Ito, G. Kahl, D. H. Krueger, R. Terauchi
Nature Meth, 3, 469-474, 2006年

A Point Mutation of Adh1 Gene is Involved in Repression of Coleoptile Elongation under Submergence in Rice
Saika, H., H.Matsumura, T. Takano, N. Tsutsumi and M. Nakazono
Breed. Sci, 56, 69-74, 2006年

High-throughput in planta expression screening identifies a class II ethylene-responsive element binding factor-like protein that regulates plant cell death and non-host resistance.
Nasir, K.H.B., Takahashi,Y., Ito A., Saitoh H, Matsumura H., Kanzaki H., Shimizu H., Ito H., Fujisawa S., Sharma P.C.,Ohme-Takagi M., Kamoun S., Terauchi R.
Plant J., 43, 491-505, 2005年

SuperSAGE combined with PCR walking allows global gene expression profiling of banana (Musa acuminata), a non-model organism.
Coemans, B., Matsumura, H., Terauchi, R., Remy, S., Swennen, R.., Sági, L.
Theor Appl Genet, 111, 1118-1126, 2005年

Serial analysis of gene expression (SAGE) of host plant resistance to the cassava mosaic disease (CMD).
Fregene,M., Matsumura,H, Terauchi,R.
Plant Mol Biol, 56, 563-571, 2004年

Overexpression of Bax-inhibitor suppresses the fungal elicitor-induced cell death in rice (Oryza sativa L.) cells .
Matsumura H., S. Nirasawa, A. Kiba, N. Urasaki, H. Saitoh, M. Ito, M. Kawai-Yamada, , H. Uchimiya, R. Terauchi
Plant J, 33, 425-434, 2003年

Gene expression analysis of plant host-pathogen interactions by SuperSAGE.
Matsumura H., S.Reich, A. Ito, H. Saitoh, S. Kamoun, P. Winter､, G. Kahl､, M. Reuter, D. H. Krueger, R. Terauchi
Proc.Natl.Acad.Sci. USA, 100, 15718-15723, 2003年

Serial Analysisof Gene Expression (SAGE) of Magnaporthe grisea: genes involved in appressorium formation.
Irie T., H.Matsumura, R.Terauchi, H.Saitoh
Mol.Gen.Genomics, 270, 181-189, 2003年

Transcripts profiling inrice (Oryza sativa L.) using serial analysis of gene expression (SAGE).
Matsumura, H., Nirasawa, S., Terauchi, R.
Plant J, 20, 719-726, 1998年

Adh1 is transcriptionally active but its translational product is reduced in a rad mutant of rice (Oryza sativa L.), which is vulnerable to submergence stress.
Matsumura, H., Takano, T., Takeda,G., Uchimiya, H.
Theor. Appl. Genet., 97, 1197-1203, 1998年

A rice mutant lacking alcohol dehydrogenase.
Matsumura,H., Takano, T., Yoshida, K.T., Takeda G.
Breed. Sci, 45, 365-367, 1995年

Molecular cloning of rice lactate dehydrogenase cDNA
Li T., Takano, T., Mastsumura,, H., Takeda G.
Jpn J Breed, 43, 129-133, 1993年

次世代シーケンサーを利用したタグによる発現解析
松村英生、寺内良平
生物科学, 64, 151-158, 2013年

SuperSAGE: Powerful Serial Analysis of Gene Expression.
Hideo Matsumura, Naoya Urasaki, Kentaro Yoshida, Detlev H. Krüger,Günter Kahl and Ryohei Terauchi
Methods in Molecular Biology, 863, 1-17, 2012年

High-throughput SuperSAGE.
Author:Matsumura H, Yoshida K, Luo S, Krüger DH, Kahl G, Schroth GP, Terauchi R.
Methods Mol Biol., 687, 135-146, 2011年

SuperSAGE
Matsumura, H., Reuter, M., Krüger, D. H., Winter, P., Kahl, G., Terauchi, R.
Method Mol Biol, 387, 55-70, 2008年

SuperSAGE: A modern platform for genome-wide quantitative transcript profiling.
Matsumura H., Krüger, D.H., Kahl,G. , Terauchi, R.
Curr. Pharma. Biotech., 9, 368-374, 2008年

SuperSAGE
Matsumra, H., Ito, A., Saitoh, H., Winter, P., Kahl, G., Reuter, M., Krueger, D. H.,Terauchi, R.
Cell. Microbiol., 7, 11-18, 2004年

The Bitter Gourd Genome
Chittaranjan Kole, Hideo Matsumura, Tusar Kanti Behera, 共著
Springer, 2020年
ISBN:978-3-030-15062-4

Tag-based Nex Generation Sequencing
Hideo Matsumura, Carlos Monina, Detlev H. Krüger, Ryohei Terauchi, Günter Kahl, DeepSuperSAGE: High-Throughput Transcriptome Sequencingwith Now- and Next-Generation Sequencing Technologies
Wiley-Blackwell, 3-21 2011年

Handbook of plant functional genomics,
Terauchi R., H. Matsumura, D.H. Krüger and G. Kahl, SuperSAGE: The most advanced transcriptome technology for functional genomics.
Wiley VCH, 37-54 2008年

SAGE: Current Technologies and Applications
Matsumura H, S.Reich, M.Reuter, D.H. Krueger, P.Winter, G. Kahl and R.Terauchi, SuperSAGE: a potent transcriptome tool for eukaryotic organisms
Horizon Scientific Press, 77-90 2005年
ISBN:SBN 978-1-904933-07-6

Genetic Mapping of Gynoecy in Momordica charantia Using RAD-seq Analysis
Hideo Matsumura, Naoki Taniai, Norimichi Miyagi,Mai Fukushima, Kazuhiko Tarora, Ayano Shudo, Naoya Urasaki
Plant and Animal GenomeXXI Conference, 2013年

Transcriptome analysis of papaya flower buds by High-Throughput SuperSAGE
Naoya Urasaki, Kazuhiko Tarora, Ayano Shudo, Moritoshi Tamaki, Norimichi Miyagi, Kentaro Yoshida, Shinichi Adaniya, Hideo Matsumura
Plant and Animal Genome XIX Conference, 2011年

Analysis of papaya sex specific SuperSAGE tags mapped on the sex chromosome　BACs.
Kazuhiko Tarora, Naoya Urasaki, , Ayano Shudo, Moritoshi Tamaki, Norimichi Miyagi, Kentaro Yoshida, Shinichi Adaniya, Hideo Matsumura
Plant and Animal Genome XIX Conference, 2011年

Digital Gene Expression analysis platform of multiple tissue samples using Next Gen Sequencers
Hideo Matsumura
Next Generation Sequencing: Platform and Progress, 2009年

日本育種学会

ニガウリにおける雌雄比率決定に関わる遺伝子の同定
科学研究費補助金, 日本学術振興会, 基盤研究(C)
2017年04月01日 - 2020年30月31日

カラヤマグワにおける全ゲノム情報基盤の確立
大日本蚕糸会 貞明皇后記念蚕糸研究助成
2016年 - 2016年

性染色体ゲノムの比較によるパパイヤ性決定遺伝子の探索
科学研究費補助金
2013年 - 2015年

遺伝子探索を効率化するデジタル遺伝子発現QTL解析法の確立
科学研究費補助金
2010年 - 2012年

次世代シークエンサーを活用したゲノム育種基盤技術の開発
受託研究, 生物系特定産業技術研究支援センター
2008年 - 2010年

ゲノム機能解析による植物の生殖機構の解明

次世代DNAシークエンサーを活用したゲノム機能解析技術の開発

25個を超えるヌクレオチドを含む認識タグを単離するためのIII型制限酵素の使用, 特許第4382676号, 特許権
松村英生,寺内良平,Gunter Kahl,Peter Winter,Detlev Kuger,Stefanie Reich

Use of a typeIII restriction enzyme to isolate sequence tags comprisingmore than 25 nucleotides, EP 1 627 074 B1, 特許権
Peter Winter, Guenter Kahl, Detlev Krueger, Stefanie Reich, Hideo Matsumura, Ryohei Terauchi

Use of a typeIII restriction enzyme to isolate sequence tags comprising more than 25 nucleotides., 1802439, 特許権
Peter Winter, Guenter Kahl, Detlev Krueger, Stefanie Reich, Hideo Matsumura, Ryohei Terauchi

Gene expression analysis using array with immobilized tags of more than 25 bp (SuperSAGE-Array), 1990882, 特許権
Hideo Matsumura, Ryohei Terauchi