YAMAMOTO, HIROKI | Shinshu University Researcher Directory

Academic Organization	Academic Assembly　School of Science and Technology　Institute of Textile Science and Technology	TEL
Education and Research Organization	Faculty of Textile Science and Technology　Department of Applied Biology	FAX
Position	Professor	Mail Address
Address	長野県上田市常田3-15-1	Web site

Profile

Assigned Class: Interdisciplinary Graduate School of Science and Technology

Current Subject: Studies on relationship between cell surface modification and morphogenesis in Bacillus subtilis
Keywords:morphogenesis cell surface modification , 2006-
Studies on the localization mechanism of the cell surface proteins
Keywords:localization mechanism cell surface proteins , 2003-
Functional analysis of the Bacillus subtilis genome
Keywords:Bacillus subtilis genome functional analysis , 1997-2002

Academic Background: Graduate School
Shinshu University , (Graduate School, Division of Textile Science and Technology) , 1991

College
Shinshu University , (Faculty of Textile Science and Technology) , 1989

Degree
Doctor of Engineering , Shinshu University

Research

Books, Articles, etc.: Books
Cell wall structure of E. coli and B. subtilis, In: Y. Sadaie and K. Matsumoto, editors, The Frontiers of Molecular Microbiology Revisited , 115-148
Kerala: Research Signpost 2012
Author:Sekiguchi, J., and H. Yamamoto

Murein Peptidase LytF, In: Neil D. Rawlings and Guy S. Salvesen, editors, Handbook of Proteolytic Enzymes, 3rd Edition. , 2479-2482
Oxford: Academic Press 2012
Author:Sekiguchi, J., and H. Yamamoto

Northern Blot Analysis with non-RI Detection Systems; Functional Analysis of Bacterial Genes, A Practical Manual, Chap. 5B, John Wiley&Sons , 41-44
2001
Author:W. Schumann/S. D. Ehrlich /N. Ogasawara eds./ Yamamoto, H./K. Asai /K. Kobayashi

Articles
Visualization of wall teichoic acid decoration in Bacillus subtilis.
Journal of Bacteriology,205(4):e0006623 2023
Author:Yutaka Koyano, Kiyoshirou Okajima, Mako Mihara, Hiroki Yamamoto

The transmembrane segment of TagH is required for wall teichoic acid transport under heat stress in Bacillus subtilis
Microbiology,164:935-945 2018
Author:Yamada, T., Miyashita, M., Kasahara, J., Tanaka, T., Hashimoto, M., Yamamoto, H.

Digestion of peptidoglycan near the cross-link is necessary for the growth of Bacillus subtilis
Microbiology,164:299～307 2018
Author:Hashimoto, M., Matsushima, H., Suparthana I. P., Ogasawara, H., Yamamoto, H., Teng, C., Sekiguchi, J.

Application of freeze-dried powders of genetically engineered microbial strains as adsorbents for rare earth metal ions
ACS Appl. Mater. Interfaces,8(40):26524-26531 2016
Author:Moriwaki, H., Masuda, R., Yamazaki, Y., Horiuchi, K., Miyashita, M., Kasahara, J., Tanaka, T., and Yamamoto, H.

Teichoic acid polymers affect expression and localization of DL-endopeptidase LytE required for lateral cell wall hydrolysis in Bacillus subtilis.
J. Bacteriol.,198(11):1585-1594 2016
Author:Kasahara, J., Y. Kiriyama, M. Miyashita, T. Kondo, T. Yamada, K. Yazawa, R. Yoshikawa and H. Yamamoto.

分泌シグナルに基づく細胞表層タンパク質のターゲティング機構の解明
IFO Research Communications,28:132-133 2014
Author:山本博規

Localization and expression of the Bacillus subtilis DL-endopeptidase LytF are influenced by mutations in LTA synthases and glycolipid anchor synthetic enzymes.
Microbiology,160:2639-2649 2014
Author:Kiriyama, Y., K. Yazawa, T. Tanaka, R. Yoshikawa, H. Yamane, M. Hashimoto, J. Sekiguchi, and H. Yamamoto.

A cell wall protein (YqgA) is genetically related to the cell wall-degrading DL-endopeptidases in Bacillus subtilis.
Biosci. Biotech. Biochem.,78(8):1428-1434 2014
Author:Hashimoto, M., K. Fujikura, Y. Miyake, Y. Higashitsuji, Y. Kiriyama, T. Tanaka, H. Yamamoto and J. Sekiguchi.

Interactions of microorganisms with rare earth ions and their utilization for separation and environmental technology
Appl. Microbiol. Biotech.,97(1):1-8 2013
Author:Moriwaki, H., and H. Yamamoto

Adsorption of rare earth ions onto the cell walls of wild type and lipoteichoic acid-defective strains of Bacillus subtilis
Appl. Microbiol. Biotech.,97(8):3721-3728 2013
Author:Moriwaki, H., R. Koide, R. Yoshikawa, Y. Warabino and H. Yamamoto

The major and minor wall teichoic acids prevent the sidewall localization of vegetative DL-endopeptidase LytF in Bacillus subtilis.
MOLECULAR MICROBIOLOGY,70(2):297-310 2008
Author:Yamamoto, H., Y. Miyake, M. Hisaoka, S. Kurosawa and Junichi Sekiguchi.

Post-translational control of vegetative cell separation enzymes through a direct interaction with specific inhibitor IseA in Bacillus subtilis.
MOLECULAR MICROBIOLOGY,70(1):168-182 2008
Author:Yamamoto, H., M. Hashimoto, Y. Higashitsuji, H. Harada, N. Hariyama, L. Takahashi, T. Iwashita, S. Ooiwa and J. Sekiguchi.

Identification and characterization of novel cell wall hydrolase CwlT: a two-domain autolysin exhibiting n-acetylmuramidase and DL-endopeptidase activities
JOURNAL OF BIOLOGICAL CHEMISTRY,283(17):11117-11125 2008
Author:Fukushima, T., Kitajima, T., H. Yamaguchi, Q. Ouyang, K. Furuhata, H. Yamamoto, T. Shida, and J. Sekiguchi

Characterization of new L,D-endopeptidase gene product CwlK (previous YcdD) that hydrolyzes peptidoglycan in Bacillus subtilis
MOLECULAR GENETICS AND GENOMICS,278(4):371-383 2007
Author:Fukushima, T; Yao, Y; Kitajima, T; Yamamoto, H; Sekiguchi, J

A new D,L-endopeptidase gene product, YojL (renamed CwlS), plays a role in cell separation with LytE and LytF in Bacillus subtilis
J. Bacteriol.,188(15):5541-5550 2006
Author:Fukushima, T., A. Afkham, S. Kurosawa, T. Tanabe, H. Yamamoto, and J. Sekiguchi.

Functional analysis of the YvrGHb two component system of Bacillus subtilis: Identification of the regulated genes by DNA microarray and Northern blot analyses
Biosci. Biotechnol. Biochem.,59(11):2155-2169 2005
Author:Serizawa, M., K. Kodama, H. Yamamoto, K. Kobayashi, N. Ogasawara, and J. Sekiguchi.

Characterization of a polysaccharide deacetylase gene homologue (pdaB) on sporulation of Bacillus subtilis
J. Biochemistry (Tokyo),136(3):283-291 2004
Author:Fukushima, T., T. Tanabe, H. Yamamoto, S. Hosoya, T. Sato, H. Yoshikawa and J. Sekiguchi

Characterization of a new Bacillus subtilis peptidoglycan hydrolase gene, yvcE (named cwlO), and the enzymatic properties of its encoded protein
J. Biosci. Bioeng.,98(3):174-181 2004
Author:Yamaguchi, H., K. Furuhata, T. Fukushima, H. Yamamoto, and J. Sekiguchi

Systematic analysis of SigD-regulated genes in Bacillus subtilis by DNA microarray and Northern blotting analyses
Gene,329:125-136 2004
Author:Serizawa, M., H. Yamamoto, H. Yamaguchi, Y. Fujita, K. Kobayashi, N. Ogasawara, and J. Sekiguchi

Localization of vegetative cell wall hydrolases, LytC, LytE and LytF, on the Bacillus subtilis cell surface, and the stability of these enzymes to cell wall-bound or extracellular proteases
J. Bacteriol.,185(22):6666-6677 2003
Author:Yamamoto, H., S. Kurosawa, and J. Sekiguchi

Transcriptional, functional and cytochemical analyses of the veg gene in Bacillus subtilis
J. Biochemistry (Tokyo),133(4):475-483 2003
Author:Fukushima, T., S. Ishikawa, H. Yamamoto, N. Ogasawara, and J. Sekiguchi

Essential Bacillus subtilis genes
Proc. Natl. Acad. Sci. USA,100(8):4678-4683 2003
Author:Kobayashi, K., T. Fukushima, S. Ishikawa, J. Sekiguchi, H. Yamamoto, N. Ogasawara （他93名）

A polysaccharide deacetylase gene (pdaA) is required for germination and for production of muramic _-lactam residues in the spore cortex of Bacillus subtilis
J. Bacteriol.,184(21):6007-6015 2002
Author:Fukushima, T., H. Yamamoto, A. Atrih, S. J. Foster, and J. Sekiguchi

Stabilization of cell wall proteins in Bacillus subtilis: a proteomic approach
Proteomics,2(5):591-602 2002
Author:Antelmann, H., H. Yamamoto, J. Sekiguchi, and M. Hecker

Simultaneous display of bacterial and fungal lipases on the cell surface of Bacillus subtilis
J. Biosci. Bioeng.,93(1):15-19 2002
Author:Kobayashi, G., K. Fujii, M. Serizawa, H. Yamamoto, and J. Sekiguchi

Production of long-chain levan by a sacC insertional mutant from Bacillus subtilis 327UH
Biosci. Biotechnol. Biochem.,66(7):1555-1558 2002
Author:Shida, T., K. Mukaijo, S. Ishikawa, H. Yamamoto, and J. Sekiguchi

Regulation of the glv operon in Bacillus subtilis: YfiA (GlvR) is a positive regulator of the operon that is repressed through CcpA and cre
J. Bacteriol.,183(17):5110-5121 2001
Author:H. Yamamoto/ M. Serizawa/ J. Thompson / J. Sekiguchi

Accumulation of a recombinant Aspergillus oryzae lipase artificially localized on the Bacillus subtilis cell surface
J. Biosci. Bioeng.,90:422-425 2000
Author:G. Kobayashi/J. Toida/T. Akamatsu/ H. Yamamoto/T. Shida / J. Sekiguchi

The CitST two-component system regulates the expression of the Mg-citrate transporter in Bacillus subtilis.
MOLECULAR MICROBIOLOGY,37(4):898-912 2000
Author:Yamamoto, H; Murata, M; Sekiguchi, J

Accumulation of an artificial cell wall-binding lipase by Bacillus subtilis wprA and/or sigD mutants
FEMS Microbiol. Letters,188(2):165-169 2000
Author:Kobayashi, G; Toida, J; Akamatsu, T; Yamamoto, H; Shida, T; Sekiguchi, J

Transcription of genes near the sspE locus of the Bacillus subtilis genome
Microbiology,145:2171-2180 1999
Author:Yamamoto, H., M. Mori, and J. Sekiguchi

Production of a recombinant lipase artificially localized on the Bacillus subtilis cell surface
FEMS Microbiol Letters,176(2):373-378 1999
Author:Tsuchiya, A; Kobayashi, G; Yamamoto, H; Sekiguchi, J

Characterization of a new sigma K-dependent cell wall hydrolase gene that plays a role in Bacillus subtilis mother cell lysis
JOURNAL OF BACTERIOLOGY,181(20):6230-6237 1999
Author:Nugroho, FA; Yamamoto, H; Kobayashi, Y; Sekiguchi, J

Crystallization and preliminary X-ray analysis of the 6-phospho-alpha-glucosidase from Bacillus subtilis
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY,55:1212-1214 1999
Author:Varrot, A; Yamamoto, H; Sekiguchi, J; Thompson, J; Davies, GJ

The gene glvA of Bacillus subtilis 168encodes a metal-requiring, NAD (H)-dependent 6-phospho-alpha-glucosidase - Assignment to family 4 of the glycosylhydrolase superfamily
JOURNAL OF BIOLOGICAL CHEMISTRY,273(42):27347-27356 1998
Author:Thompson, J; Pikis, A; Ruvinov, SB; Henrissat, B; Yamamoto, H; Sekiguchi, J

The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
NATURE,390(6657):249-256 1997
Author:Kunst, F; Ogasawara, N; Moszer, I; Albertini, AM; Alloni, G; Azevedo, V; Bertero, MG; Bessieres, P; Bolotin, A; Borchert, S; Borriss, R; Boursier, L; Brans, A; Braun, M; Brignell, SC; Bron, S; Brouillet, S; Bruschi, CV; Caldwell, B; Capuano, V; Carter, NM; Choi, SK; Codani, JJ; Connerton, IF; Cummings, NJ; Daniel, RA; Denizot, F; Devine, KM; Dusterhoft, A; Ehrlich, SD; Emmerson, PT; Entian, KD; Errington, J; Fabret, C; Ferrari, E; Foulger, D; Fritz, C; Fujita, M; Fujita, Y; Fuma, S; Galizzi, A; Galleron, N; Ghim, SY; Glaser, P; Goffeau, A; Golightly, EJ; Grandi, G; Guiseppi, G; Guy, BJ; Haga, K; Haiech, J; Harwood, CR; Henaut, A; Hilbert, H; Holsappel, S; Hosono, S; Hullo, MF; Itaya, M; Jones, L; Joris, B; Karamata, D; Kasahara, Y; KlaerrBlanchard, M; Klein, C; Kobayashi, Y; Koetter, P; Koningstein, G; Krogh, S; Kumano, M; Kurita, K; Lapidus, A; Lardinois, S; Lauber, J; Lazarevic, V; Lee, SM; Levine, A; Liu, H; Masuda, S; Mauel, C; Medigue, C; Medina, N; Mellado, RP; Mizuno, M; Moestl, D; Nakai, S; Noback, M; Noone, D; OReilly, M; Ogawa, K; Ogiwara, A; Oudega, B; Park, SH; Parro, V; Pohl, TM; Portetelle, D; Porwollik, S; Prescott, AM; Presecan, E; Pujic, P; Purnelle, B; Rapoport, G; Rey, M; Reynolds, S; Rieger, M; Rivolta, C; Rocha, E; Roche, B; Rose, M; Sadaie, Y; Sato, T; Scanlan, E; Schleich, S; Schroeter, R; Scoffone, F; Sekiguchi, J; Sekowska, A; Seror, SJ; Serror,P; Shin, BS; Soldo, B; Sorokin, A; Tacconi, E; Takagi, T; Takahashi, H; Takemaru, K; Takeuchi, M; Tamakoshi, A; Tanaka, T; Terpstra, P; Tognoni, A; Tosato, V; Uchiyama, S; Vandenbol, M; Vannier, F;Vassarotti, A; Viari, A; Wambutt, R; Wedler, E; Wedler, H; Weitzenegger, T; Winters, P; Wipat, A; Yamamoto, H; Yamane, K; Yasumoto, K; Yata, K; Yoshida, K; Yoshikawa, HF; Zumstein, E; Yoshikawa, H; Danchin, A

Cloning and sequencing of a 35.7 kb in the 70 degree - 73 degree region of the Bacillus subtilis genome reveal genes for a new two-component system, three spore germination protein, an iron uptake system and a stress response protein
Gene,194(2):191-199 1997
Author:Hiroki Yamamoto;Shigeki Uchiyama;Fajar Aji Nugroho;Junichi Sekiguchi

A 23.4 kb segment at the 69 degree to 70 degree region of the Bacillus subtilis genome
Microbiology,143(4):1317-1320 1997
Author:Yamamoto, H; Uchiyama, S; Nugroho, FA; Sekiguchi, J

The Bacillus subtilis chromosome region near 78 degrees contains the genes encoding a new two-component system, three ABC transporters and a lipase
GENE,181(1-2):147-151 1996
Author:Yamamoto, H; Uchiyama, S; Sekiguchi, J

Cloning and sequencing of a 27.8-kb nucleotide sequence of the 79 degree - 81 degree region of the Bacillus subtilis genome containing the sspE locus
DNA Res.,3:257-262 1996
Author:Hiroki Yamamoto;Shigeki Uchiyama;Junichi Sekiguchi

Cloning and sequencing of a 40.6 kb segment in the 73 degree - 76 degree region of the Bacillus subtilis chromosome containing genes for trehalose metabolism and acetoin utilization
Microbiology,142(11):3057-3065 1996
Author:Hiroki Yamamoto;Shigeki Uchiyama;Junichi Sekiguchi

Determination of a 12 kb nucleotide sequence around the 76 degrees region of the Bacillus subtilis chromosome
MICROBIOLOGY-UK,142:1417-1421 1996
Author:Yamamoto, H; Uchiyama, S; Fajar, AN; Ogasawara, N; Sekiguchi,J

Nucleotide sequence and regulation of a new putative cell wall hydrolase gene, cwlD, which affects germination in Bacillus subtilis
J. Bacteriol.,177(19):5582-5589 1995
Author:Junichi Sekiguchi;Kazumi Akeo;Hiroki Yamamoto;Fuat K. Khasanov;Juan C. Alonso;Akio Kuroda

Nucleotide sequence and characterization of the large mitochondrial rRNA gene of Penicillium urticae, and its comparison with those of other filamentous fungi
J. Biochem.,117(4):888-896 1995
Author:Hiroki Yamamoto;Atsushi Naruse;TakeshiOhsaki;Junichi Sekiguchi

Nucleotide sequence of the large mitochondrial rRNA gene of Penicillium chrysogenum
Biochim. Biophys. Acta,1172:353-356 1993
Author:Naruse, A., H. Yamamoto, and J. Sekiguchi.

Autonomously replicating fragments of mitochondrial DNA from Penicillium urticae in Saccharomyces cerevisiae
J. Ferment. Bioeng.,71:275-277 1991
Author:Yamamoto, H., Y. Yoshida, Y. Kitamura, and J. Sekiguchi.

Transformation of Penicillium urticae with plasmids containing the hygromycin B resistance gene
Agric. Biol. Chem.,55:3053-3057 1991
Author:Kiuchi, N., A. Naruse, H. Yamamoto, and J. Sekiguchi.

CHARACTERIZATION AND COMPARISON OF MITOCHONDRIAL DNAS AND RIBOSOMAL-RNAS FROM PENICILLIUM-URTICAE AND PENICILLIUM-CHRYSOGENUM
JOURNAL OF GENERAL MICROBIOLOGY,136:535-543 1990
Author:Sekiguchi, J., T. Ohsaki, H. Yamamoto, K. Koichi, and T. Shida.

Shinshu University Researcher Directory

YAMAMOTO HIROKI

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YAMAMOTO　HIROKI