MATSUMURA, Hideo | Shinshu University Researcher Directory

Academic Organization	Academic Assembly School of Science and Technology Institute of Textile Science and Technology	TEL
Education and Research Organization	Research Center for Advanced Science and Technology	FAX
Position	Professor	Mail Address
Address	Tokita 3-15-1 Ueda,Nagano 386-8567	Web site

Profile

Research Field: genomics
Science in genetics and breeding

Current Subject: development of functional genomics tool using next generation sequencing
Keywords:functional genomics
functional genomics of plant reproduction mechanisms

Academic Societies: Academic Societies
Japanese society of Plant breeding

Academic Background: Graduate School
University of Tokyo , (生産•環境生物学 , 農学生命科学) , 1996
University of Tokyo , (生産•環境生物学 , 農学生命科学) , 1993

College
University of Tokyo , (農学部) , 1991

Degree
博士（農学） , University of Tokyo

Research Career: Research Career
2001-2009 , senior researcher, Iwate Biotechnology Research Center
1998-2001 , researcher, Iwate Biotechnology Research Center
1996-1998 , Post doctoral researcher, Institute of molecular and Cellular Biosciences, University of Tokyo

Research

Books, Articles, etc.: Books
The Bitter Gourd Genome
Springer 2020
Author:Chittaranjan Kole, Hideo Matsumura, Tusar Kanti Behera

DeepSuperSAGE: High-Throughput Transcriptome Sequencingwith Now- and Next-Generation Sequencing Technologies, Tag-based Nex Generation Sequencing , 3-21
Wiley-Blackwell 2011
Author:Hideo Matsumura, Carlos Monina, Detlev H. Krüger, Ryohei Terauchi, Günter Kahl

SuperSAGE: The most advanced transcriptome technology for functional genomics., Handbook of plant functional genomics, , 37-54
Wiley VCH 2008
Author:Terauchi R., H. Matsumura, D.H. Krüger and G. Kahl

SuperSAGE: a potent transcriptome tool for eukaryotic organisms, SAGE: Current Technologies and Applications , 77-90
Horizon Scientific Press 2005
Author:Matsumura H, S.Reich, M.Reuter, D.H. Krueger, P.Winter, G. Kahl and R.Terauchi

Articles
Development of PCR-based marker for resistance to Fusarium wilt race 2 in lettuce (Lactuca sativa L.)
Euphytica,217:126 2021
Author:Kousuke Seki, Kenji Komatsu, Masahiro Hiraga, Keisuke Tanaka, Yuichi Uno & Hideo Matsumura

Genomic characterization of a rare Carica papaya X chromosome mutant reveals a candidate monodehydroascorbate reductase 4 gene involved in all-hermaphrodite phenomenon
Mol Genet Genomics,296(6):1323-1335 2021
Author:Jen-Ren Chen , Hiroki Ueno, Hideo Matsumura, Naoya Urasaki, Chen-Yu Lee, Fure-Chyi Chen, Shih-Wen Chin, Chun-Chi Liu , Chan-Tai Chiu, Kazuhiko Tarora, Jing-Yi Li, Chieh Ying Lee, Hsin-Mei Ku

A CIN-like TCP transcription factor (LsTCP4) having retrotransposon insertion associates with a shift from Salinas type to Empire type in crisphead lettuce (Lactuca sativa L.)
Horticulture Research,7:15 2020
Author:Kousuke Seki, Kenji Komatsu, Keisuke Tanaka, Masahiro Hiraga, Hiromi Kajiya-Kanegae, Hideo Matsumura, Yuichi Uno

Long-read bitter gourd (Momordica charantia) genome and the genomic architecture of nonclassic domestication
Proc. Natl. Acad. Sci. USA,117(25):14543-14551 2020
Author:Matsumura H, Hsiao MC, Lin YP, Toyoda A, Taniai N, Tarora K, Urasaki N, Anand SS, Dhillon P.S. N, Schafleitner R, Lee CR

Identification of dominant genetic markers relevant to male sex determination in mulberry (Morus alba L.)
EUPHYTICA,215(11) 2019(Oct.)
Author:Atsumi, Ryo; Nishihara, Rio; Tarora, Kazuhiko; Urasaki, Naoya; Matsumura, Hideo;

HT-SuperSAGE of the gut tissue of a Vip3Aa-resistant Heliothis virescens (Lepidoptera: Noctuidae) strain provides insights into the basis of resistance
INSECT SCIENCE,26(3):479-498 2019(Jun.)
Author:Ayra-Pardo, Camilo; Ochagavia, Maria E.; Raymond, Ben; Gulzar, Asim; Rodriguez-Cabrera, Lianet; Rodriguez de la Noval, Claudia; Moran Bertot, Ivis; Terauchi, Ryohei; Yoshida, Kentaro; Matsumura, Hideo; Tellez Rodriguez, Pilar; Hernandez Hernandez, Daily; Borras-Hidalgo, Orlando; Wright, Denis J.;

Dissecting the all-hermaphrodite phenomenon of a rare X chromosome mutant in papaya (Carica papaya L.)
MOLECULAR BREEDING,39(1) 2019(Jan.)
Author:Chen, Jen-Ren; Urasaki, Naoya; Matsumura, Hideo; Chen, I-Cheng; Lee, Mei-Jiuan; Chang, Hui-Ju; Chung, Wen-Chuan; Ku, Hsin-Mei;

Identification of candidate flowering and sex genes in white Guinea yam (D. rotundata Poir.) by SuperSAGE transcriptome profiling.
PloS One,14(9):e0216912 2019
Author:Girma G, Natsume S, Carluccio AV, Takagi H, Matsumura H, Uemura A, Muranaka S, Takagi H, Stavolone L, Gedil M, Spillane C, Terauchi R, Tamiru M.

Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination
BMC Biology,15:86 2017
Author:Tamiru, M., Natsume, S., Takagi, Hiroki, White, B., Yaegashi, H., Shimizu, M., Yoshida, K., Uemura, A., Oikawa, K., Abe, A., Urasaki, N., Matsumura, H., Babil, P., Yamanaka, S., Matsumoto, R., Muranaka, S., Girma, G., Lopez-Montes, A., Gedil, M., Bhattacharjee, R., Abberton, M., Kumar, L., Rabbi, I., Tsujimura, M., Terachi, T., Haerty, W., Corpas, M., Kamoun, S., Kahl, G., Takagi, Hiroko, Asiedu, R., Terauchi, R.

OsHKT1;5 mediates Na+ exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice.
Plant J. 2017
Author:Kobayashi NI, Yamaji N, Yamamoto H, Okubo K, Ueno H, Costa A, Tanoi K, Matsumura H, Fujii-Kashino M, Horiuchi T, Nayef MA, Shabala S, An G, Ma JF, Horie T.

Draft genome sequence of bitter gourd (Momordica charantia), a vegetable and medicinal plant in tropical and subtropical regions
DNA Research,24:51-58 2017
Author:Naoya Urasaki, Hiroki Takagi, Satoshi Natsume, Aiko Uemura, Naoki Taniai, Norimichi Miyagi, Mai Fukushima, Shouta Suzuki, Kazuhiko Tarora, Moritoshi Tamaki, Moriaki, Sakamoto, Ryohei Terauchi, Hideo Matsumura

Magnaporthe oryzae Glycine-Rich Secretion Protein, Rbf1 Critically Participates in Pathogenicity through the Focal Formation of the Biotrophic Interfacial Complex.
PLoS Pathogens,12: e1005921 2016
Author:Nishimura T, Mochizuki S, Ishii-Minami N, Fujisawa Y, Kawahara Y, Yoshida Y, Okada K, Ando S, Matsumura H, Terauchi R, Minami E, Nishizawa Y

Development of plants resistant to Papaya leaf distortion mosaic virus by intergeneric hybridization between Carica papaya and Vasconcellea cundinamarcensis.
Breeding Science,66:734-741 2016
Author:Tarora K, Shudo A,Kawano S,Yasuda K,Ueno H, Matsumura H, Urasaki N

'Candidatus Liberibacter asiaticus', Causal Agent of Citrus Huanglongbing, Is Reduced by Treatment with Brassinosteroids.
PLoS One,11:e0146223 2016
Author:Eduardo Canales, Yamilet Coll, Ingrid Hernández, Roxana Portieles, Mayra Rodríguez García, Yunior López, Miguel Aranguren, Eugenio Alonso, Roger Delgado4 Maritza Luis, Lochy Batista, Camilo Paredes, Meilyn Rodríguez, Merardo Pujol, María Elena Ochagavia, Viviana Falcón, Ryohei Terauchi, Hideo Matsumura, Camilo Ayra-Pardo, Raixa Llauger, María del Carmen Pérez, Mirian Núñez, Melissa S. Borrusch, Jonathan D. Walton, Yussuan Silva, Eulogio Pimentel, Carlos Borroto, Orlando Borrás-Hidalgo

MutMap accelerates breeding of a salt-tolerant rice cultivar
Nature Biotechnology,in press:doi:10.1038/nbt.3188 2015
Author:Hiroki Takagi, Muluneh Tamiru, Akira Abe, Kentaro Yoshida, Aiko Uemura, Hiroki Yaegashi, Tsutomu Obara, Kaori Oikawa, Hiroe Utsushi, Eiko Kanzaki, Chikako Mitsuoka, Satoshi Natsume, Shunichi Kosugi, Hiroyuki Kanzaki, Hideo Matsumura, Naoya Urasaki, Sophien Kamoun, Ryohei Terauchi

A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in rice (Oryza sativa L.)
Plant Molecular Biology,in press 2015
Author:Muluneh Tamiru, Jerwin R. Undan, Hiroki Takagi, Akira Abe, Kakoto Yoshida, Jesusa Q. Undan, Satoshi Natsume, Aiko Uemura, Hiromasa Saitoh, Hideo Matsumura, Naoya Urasaki, Takao Yokota, Ryohei Terauchi

Genome sequence comparison reveals a candidate gene involved in male–hermaphrodite differentiation in papaya (Carica papaya) trees
Molecular Genetics and Genomics,290:661-670 2015
Author:Hiroki Ueno, Naoya Urasaki, Satoshi Natsume, Kentaro Yoshida, Kazuhiko Tarora, Ayano Shudo, Ryohei Terauchi, Hideo Matsumura

Functional characterization of a new grapevine MYB transcription factor and regulation of proanthocyanidin biosynthesis in grapes.
Journal of Experimental Botany,65:4433-4449 2014
Author:Kazuya Koyama, Mineyo Numata, Ikuko Nakajima, Nami Goto-Yamamoto, Hideo Matsumura and Nobukazu Tanaka

Mapping of the gynoecy in bitter gourd (Momordica charantia) using RAD-seq analysis
PLoS ONE,9(1):e87138 2014
Author:Matsumura H, Miyagi N, Taniai N, Fukushima M, Tarora K, Shudo A, Urasak N

Rice alcohol dehydrogenase 1 promotes survival and has a major impact on carbohydrate metabolism in the embryo and endosperm when seeds are germinated in partially oxygenated water.
Ann. Bot,113(5):851-859 2014
Author:Takahashi, H., Greenway, H., Matsumura, H., Tsutsumi N. and Nakazono, M

Expression of a microbial serine proteinase inhibitor gene enhances the tobacco defense against oomycete pathogens
Physiol Mol Plant Path,84:99-106 2013
Author:Silva Y, Portieles R, Pujol M, Terauchi R, Matsumura H, Serrano M, Borras-Hidalgo O

Distribution of CRa in clubroot resistance (CR) cultivars of Chinese cabbage
Plant Biotechnol,30:393-397 2013
Author:Aruga, D, Ueno H, Matsumura H, Matsumoto E, Hyashida N

MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice.
PLoS ONE,8(7):e68529 2013
Author:Fekih, R., Takagi, H., Tamiru, M., Abe, A., Natsume, S., Yaegashi, H., Sharma, S., Sharma, S., Kanzaki, H., Matsumura, H., Saitoh, H., Mitsuoka, C., Utsushi, H., Uemura, A., Kanzaki, E., Kosugi, S., Yoshida, K., Cano, L., Kamoun, S., Terauchi, R

MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii.
New Phytologist,200(1):276-283 2013
Author:Takagi H., Uemura A., Yaegashi H., Tamiru M., Abe A., Mitsuoka C., Utsushi H., Natsume S., Kanzaki H., Matsumura H., Saitoh H., Yoshida K., Cano L.M., Kamoun S., Terauchi R

Deep sequencing uncovers commonality in small RNA profiles between transgene-induced and naturally occurring RNA silencing of chalcone synthase-A.
BMC Genomics,14:63 2013
Author:Kasai, M., Matsumura, H., Yoshida, K., Terauchi, R., Taneda, A., Kanazawa, A

Molecular characterization of the CRa gene conferring clubroot resistance in Brassica rapa.
Plant Mol Biol,80(6):621-629 2012(Dec.)
Author:Ueno H, Matsumoto E, Aruga D, Kitagawa S, Matsumura H, Hayashida N

Analysis of RAPD and AFLP markers linked to resistance to Fusarium oxysporum f. sp lactucae race 2 in lettuce (Lactuca sativa L.)
EUPHYTICA,187(1):1-9 2012
Author:Aruga, D; Tsuchiya, N; Matsumura, H; Matsumoto, E; Hayashida, N

Whole genome sequencing and future breeding of rice.
J. Plant Biochem. Biotechnol,21:10-14 2012
Author:Terauchi, R., Abe, A., Takagi, H., Yoshida, K., Kosugi, S., Natsume, S., Yaegashi, H, Kanzaki, H., Matsumura, H., Mitsuoka, C., Utsushi, H., Tamiru, M.

Digital Transcriptome Analysis of Putative Sex-Determination Genes in Papaya (Carica papaya)
PLoS ONE,7(7):e40904 2012
Author:Naoya Urasaki, Kazuhiko Tarora, Ayano Shud1, Hiroki Ueno, Moritoshi Tamaki, Norimichi Miyag, Shinichi Adaniya, Hideo Matsumura

Large-scale gene disruption in Magnaporthe oryzae identifies MC69, a secreted protein required for infection by monocot and dicot fungal pathogens.
PLoS Pathog,8(5):e1002711 2012
Author:Saitoh H, Fujisawa S, Mitsuoka C, Ito A, Hirabuchi A, Ikeda K, Irieda H, Yoshino K, Yoshida K, Matsumura H, Tosa Y, Win J, Kamoun S, Takano Y, Terauchi R

Genome sequencing reveals agronomically important loci in rice using MutMap.
Nat. Biotechnol.,30:174-178 2012
Author:Abe A, Kosugi S, Yoshida K, Natsume S, Takagi H, Kanzaki H, Matsumura H, Yoshida K, Mitsuoka C, Tamiru M, Innan H, Cano L, Kamoun S, Terauchi R.

The gene expression landscape of thermogenic skunk cabbage suggests critical roles for mitochondrial and vacuolar metabolic pathways in the regulation of thermogenesis.
Plant Cell Environ.,35:554-566 2012
Author:Ito-Inaba Y, Hida Y, Matsumura H, Masuko H, Yazu F, Terauchi R, Watanabe M, Inaba

Cell division and cell elongation in the coleoptile of rice alcohol dehydrogenase 1-deficient mutant are reduced under complete submergence.
Ann. Bot.,108:253-261 2011
Author:Takahashi H, Saika H, Matsumura H, Nagamura Y, Tsutsumi N, Nishizawa NK, Nakazono M.

A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes.
Plant J.,66(3):467-479 2011
Author:Okuyama Y, Kanzaki H, Abe A, Yoshida K, Tamiru M, Saitoh H, Fujibe T, Matsumura H, Shenton M, Galam DC, Undan J, Ito A, Sone T, Terauchi R.

Papaya heat stress transcription factor, CphsfB1, a constituent of a gene cluster related to seed germination
J. Plant Biotech.,102:69-77 2010
Author:K. Tarora, M. Tamaki, A. Shudo, N. Urasaki, H. Matsumura, S. Adaniya

High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing.
PLoS ONE,5(8):e12010 2010
Author:Matsumura H, Yoshida K, Luo S, Kimura E, Fujibe T, Albertyn Z, Barrero RA, Krüger DH, Kahl G, Schroth GP, Terauchi R

Metabolome analysis of response to oxidative stress in rice suspension cells overexpressing cell death suppressor Bax inhibitor-1.
Plant Cell Physiol.,51:9-20 2010
Author:Ishikawa T, Takahara K, Hirabayashi T, Matsumura H, Fujisawa S, Terauchi R, Uchimiya H, Kawai-Yamada M.

Coordination of plastid protein import and nuclear gene expression by plastid-to-nucleous retrograde signaling..
Plant Physiol,151:1339-1353 2009
Author:Kakizaki,T., Matsumura, H., Nakayama, K., Che, F.-S., Terauchi, R., Inaba, T.

Rice blast association genetics reveals three novel avirulence genes, AVR-Pia, AVR-Pii, AVR-Pik/km/kp, whose products are recognized inside rice cells.
Plant Cell,21:1573-1591 2009
Author:Yoshida, K., Saitoh, H., Fujisawa, S., Kanzaki, H., Matsumura,H., Yoshida, K., Tosa, Y., Chuma, I., Takano, Y., Win, J., Kamoun, S., Terauchi, R.

Unravelling the interaction of HCMV with dendritic cells using SuperSAGE.
J. Gen. Virol,90:2221-2233 2009
Author:Raftery, M.J., Moncke-Buchner, E., Matsumura, H., Giese, T., Winkelmann, B., Reuter, M., Terauchi, R., Schonrich, G., Krueger, D. H.

Functional characterization and modulation of the DNA cleavage efficiency of Type III restriction enconuclease EcoP15I in its interaction with two sites in the DNA target.
J. Mol. Biol.,387:1309-1319 2009
Author:Moencke-Buchner, E. , Rothenberg, M., Reich, S., Wagenfuehr, K., Matsumura, H., Terauchi, R., Reuter, M., Krueger, D.H.

Serine palmitoyltransferase, the first step enzyme in sphingolipid biosynthesis, is involved in non-host resistance.
Mol. Plant-Microbe Interact,22:31-38 2009
Author:Takahashi, Y., Berberich, T., Kanzaki, H., Matsumura, H., Saitoh, H., Kusano, T., Terauchi, R.

SuperSAGE: The drought stress-responsive transcriptome of chickpea roots.
BMC Genomics,9:553-580 2009
Author:Molina, C. M. M., Rotter, B., Horres, R., Udupa, S., Besser, B., Bellarmino, L., Baum, M., Matsumura, H., Terauchi, R., Kahl, G., Winter, P

Unraveling the roles of sphingolipids in plant innate immunity.
Plant Signaling Behavior,4:536-538 2009
Author:Takahashi, Y., Berbeich, T., Kanzaki, H., Matsumura, H., Saitoh, H., Kusano,T., Terauchi, R.

Spermine signaling plays a significant role in the defense response of Arabidopsis thaliana to cucumber mosaic virus.
J. Plant Physiol,166:626-643 2008
Author:Mitsuya, Y., Takahashi, Y., Berberich, T., Miyazaki, A., Matsumura, H., Takahashi, H., Terauchi, R., Kusano, T.

Functionalgenomics in a non-model crop: transcriptomics or proteomics?
Physiol. Plant.,133:117-130 2008
Author:Carpentier, S.C., Coemans, B., Podevin, N., Laukens, K., Witters, E., Matsumura, H., Terauchi, R. Swennen, R. Panis, B

The cell death factor, a cell wall elicitor of rice blast fungus (Magnaporthe grisea) causes metabolic alterations including GABA shunt in rice cultured cells.
Plant Signaling Behavior,3:945-953 2008
Author:Takahashi, H., Yamada-Kawai M., Matsumura, H., Uchimiya, H.

SuperSAGE revealed different classes of early resistance response genes in Capsicum chinense plants harboring L3-resistance gene infected with Pepper mild mottle virus.
J. General Plant Pathol.,74:313-321 2008
Author:Hamada, H., Matsumura, H., Tomita, R., Terauchi, R.,Suzuki, K., Kobayashi,K.

High-throughput in planta expression screening identifies an ADP-ribosylation factor (ARF1) involved in non-host resistance and R gene-mediated resistance.
Mol. Plant Pathol,9:25-36 2008
Author:Coemans, B., Takahashi, Y., Berberich, T., Ito, A., Kanzaki, H., Matsumura, H., Saitoh, H., Tsuda, S., Kamoun, S., Sági, L., Swennen, R., Terauchi, R

A novel MAPKK involved in cell death and defense signaling.
Plant Signaling and Behavior,2:396-398 2007
Author:Takahashi, Y., Bin Nasir, K. H., Ito, A., Kanzaki, H., Matsumura, H., Saitoh, H., Fujisawa, S., Kamoun, S., Terauchi, R

High-throughput screen of cell death-inducing factors identifies a novel MAPKK that transduces INF1-mediated cell death signaling
Plant J.,49:1030-1040 2007
Author:Takahashi, Y. K. H. Bin Nasir, A. Ito, H. Kanzaki, H Matsumura, H. Saitoh, S. Fujisawa, S. Kamoun, R.Terauchi

Large-scale DNA polymorphism study of Oryza sativa and O. rufipogon reveals the origin and divergence of Asian rice.
Theor. Appl. Genet.,114:731-743 2007
Author:Rakshit, S., Rakshit, A., Matsumura, H., Takahashi, Y., Hasegawa, Y., Ito, A., Ishii, T., Miyashita, N. T., Terauchi, R.

A Point Mutation of Adh1 Gene is Involved in Repression of Coleoptile Elongation under Submergence in Rice
Breed. Sci,56:69-74 2006
Author:Saika, H., H.Matsumura, T. Takano, N. Tsutsumi and M. Nakazono

SuperSAGE array: the direct use of 26-base-pair transcript tags in oligonucleotide arrays.
Nature Meth,3:469-474 2006
Author:Matsumura H., K.H.B, A, Nasir, K. Yoshida, A. Ito, G. Kahl, D. H. Krueger, R. Terauchi

Regulatory mechanisms of ROI generation are affected by rice spl mutations.
Plant Cell Physiol,47:1035-1044 2006
Author:Kojo, K. T.i Yaeno, K. Kusumi, H. Matsumura, S. Fujisawa, R. Terauchi, K. Iba

SuperSAGE combined with PCR walking allows global gene expression profiling of banana (Musa acuminata), a non-model organism.
Theor Appl Genet,111:1118-1126 2005
Author:Coemans, B., Matsumura, H., Terauchi, R., Remy, S., Swennen, R.., Sági, L.

High-throughput in planta expression screening identifies a class II ethylene-responsive element binding factor-like protein that regulates plant cell death and non-host resistance.
Plant J.,43:491-505 2005
Author:Nasir, K.H.B., Takahashi,Y., Ito A., Saitoh H, Matsumura H., Kanzaki H., Shimizu H., Ito H., Fujisawa S., Sharma P.C.,Ohme-Takagi M., Kamoun S., Terauchi R.

Serial analysis of gene expression (SAGE) of host plant resistance to the cassava mosaic disease (CMD).
Plant Mol Biol,56:563-571 2004
Author:Fregene,M., Matsumura,H, Terauchi,R.

Serial Analysisof Gene Expression (SAGE) of Magnaporthe grisea: genes involved in appressorium formation.
Mol.Gen.Genomics,270:181-189 2003
Author:Irie T., H.Matsumura, R.Terauchi, H.Saitoh

Gene expression analysis of plant host-pathogen interactions by SuperSAGE.
Proc.Natl.Acad.Sci. USA,100:15718-15723 2003
Author:Matsumura H., S.Reich, A. Ito, H. Saitoh, S. Kamoun, P. Winter､, G. Kahl､, M. Reuter, D. H. Krueger, R. Terauchi

Overexpression of Bax-inhibitor suppresses the fungal elicitor-induced cell death in rice (Oryza sativa L.) cells .
Plant J,33:425-434 2003
Author:Matsumura H., S. Nirasawa, A. Kiba, N. Urasaki, H. Saitoh, M. Ito, M. Kawai-Yamada, , H. Uchimiya, R. Terauchi

Transcripts profiling inrice (Oryza sativa L.) using serial analysis of gene expression (SAGE).
Plant J,20:719-726 1998
Author:Matsumura, H., Nirasawa, S., Terauchi, R.

Adh1 is transcriptionally active but its translational product is reduced in a rad mutant of rice (Oryza sativa L.), which is vulnerable to submergence stress.
Theor. Appl. Genet.,97:1197-1203 1998
Author:Matsumura, H., Takano, T., Takeda,G., Uchimiya, H.

A rice mutant lacking alcohol dehydrogenase.
Breed. Sci,45:365-367 1995
Author:Matsumura,H., Takano, T., Yoshida, K.T., Takeda G.

Molecular cloning of rice lactate dehydrogenase cDNA
Jpn J Breed,43:129-133 1993
Author:Li T., Takano, T., Mastsumura,, H., Takeda G.

Presentations
Genetic Mapping of Gynoecy in Momordica charantia Using RAD-seq Analysis
Plant and Animal GenomeXXI Conference 2013
Presenter:Hideo Matsumura, Naoki Taniai, Norimichi Miyagi,Mai Fukushima, Kazuhiko Tarora, Ayano Shudo, Naoya Urasaki

Analysis of papaya sex specific SuperSAGE tags mapped on the sex chromosome　BACs.
Plant and Animal Genome XIX Conference 2011
Presenter:Kazuhiko Tarora, Naoya Urasaki, , Ayano Shudo, Moritoshi Tamaki, Norimichi Miyagi, Kentaro Yoshida, Shinichi Adaniya, Hideo Matsumura

Transcriptome analysis of papaya flower buds by High-Throughput SuperSAGE
Plant and Animal Genome XIX Conference 2011
Presenter:Naoya Urasaki, Kazuhiko Tarora, Ayano Shudo, Moritoshi Tamaki, Norimichi Miyagi, Kentaro Yoshida, Shinichi Adaniya, Hideo Matsumura

Digital Gene Expression analysis platform of multiple tissue samples using Next Gen Sequencers
Next Generation Sequencing: Platform and Progress 2009
Presenter:Hideo Matsumura

MISC
次世代シーケンサーを利用したタグによる発現解析
生物科学,64:151-158 2013
Author:松村英生、寺内良平

SuperSAGE: Powerful Serial Analysis of Gene Expression.
Methods in Molecular Biology,863:1-17 2012
Author:Hideo Matsumura, Naoya Urasaki, Kentaro Yoshida, Detlev H. Krüger,Günter Kahl and Ryohei Terauchi

High-throughput SuperSAGE.
Methods Mol Biol.,687:135-146 2011
Author:Author:Matsumura H, Yoshida K, Luo S, Krüger DH, Kahl G, Schroth GP, Terauchi R.

SuperSAGE: A modern platform for genome-wide quantitative transcript profiling.
Curr. Pharma. Biotech.,9:368-374 2008
Author:Matsumura H., Krüger, D.H., Kahl,G. , Terauchi, R.

SuperSAGE
Method Mol Biol,387:55-70 2008
Author:Matsumura, H., Reuter, M., Krüger, D. H., Winter, P., Kahl, G., Terauchi, R.

SuperSAGE
Cell. Microbiol.,7:11-18 2004
Author:Matsumra, H., Ito, A., Saitoh, H., Winter, P., Kahl, G., Reuter, M., Krueger, D. H.,Terauchi, R.

Patents: Patents
Use of a typeIII restriction enzyme to isolate sequence tags comprisingmore than 25 nucleotides , （欧州特許）
Use of a typeIII restriction enzyme to isolate sequence tags comprising more than 25 nucleotides. , （中国特許）
Gene expression analysis using array with immobilized tags of more than 25 bp (SuperSAGE-Array) , （中国特許）

Research Grants: Cooperative research with industry
2008 - 2010 , 次世代シークエンサーを活用したゲノム育種基盤技術の開発

Grants‐in‐aid for Scientific Research(Research Representative)
2017 - 2019 , ニガウリにおける雌雄比率決定に関わる遺伝子の同定 , 基盤研究(C)
2013 - 2015 , 性染色体ゲノムの比較によるパパイヤ性決定遺伝子の探索
2010 - 2012 , 遺伝子探索を効率化するデジタル遺伝子発現QTL解析法の確立

Other
2016 - 2016 , カラヤマグワにおける全ゲノム情報基盤の確立

Shinshu University Researcher Directory

MATSUMURA Hideo

Profile

Research

MATSUMURA　Hideo